DiffEqBayes.jl: Bayesian Parameter Estimation for Differential Equations

This repository is a set of extension functionality for estimating the parameters of differential equations using Bayesian methods. It allows the choice of using CmdStan.jl, Turing.jl, DynamicHMC.jl and ApproxBayes.jl to perform a Bayesian estimation of a differential equation problem specified via the DifferentialEquations.jl interface.

Installation

To install DiffEqBayes.jl, use the Julia package manager:

using Pkg
Pkg.add("DiffEqBayes")

Contributing

• Please refer to the SciML ColPrac: Contributor's Guide on Collaborative Practices for Community Packages for guidance on PRs, issues, and other matters relating to contributing to SciML.
• See the SciML Style Guide for common coding practices and other style decisions.
• There are a few community forums:
  • The #diffeq-bridged and #sciml-bridged channels in the Julia Slack
  • The #diffeq-bridged and #sciml-bridged channels in the Julia Zulip
  • On the Julia Discourse forums
  • See also SciML Community page